AIMS Geonetwork
Analysis of eReefs water quality scenarios to assess implications of land management for the CoTS initiation zone
R scripts and data files used to process, analyse and visualise eReefs catchment counter-factual scenario model data for the paper, "Kroon, Frederieke J., Joseph R. Crosswell, and Barbara J. Robson. The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone. Marine Pollution Bulletin 195 (2023): 115255."
Four R scripts are included:
cots1.R extracts all data from the eReefs model scenario outputs and produces an R data file for each scenario. These intermediate data files are not provided but can be re-created using this script and the original eReefs model data.
cots_reprocess.R puts all six scenarios into one combined dataframe and produces daily_values_all_scenarios3.rda or daily_values_all_scenarios3_large.rda, depending on settings. These intermediate data files are not provided.
ccip_salinity.R extracts salinity from the baseline scenario and adds it to the dataframe for all scenarios, producing daily_values_all_scenarios4.rda or daily_values_all_scenarios4_large.rda, depending on settings. These final data files are provided.
cots_analysis.R produces the figures and tables used in the manuscript.
Data used come from eReefs model counter-factual scenarios produced by CSIRO and available from https://dapds00.nci.org.au/thredds/catalogs/fx3/catalog.html
Simple
Identification info
- Date (Revision)
- 2024-10-17T00:00:00
Publisher
Australian Institute of Marine Science (AIMS) - ()
PRIVATE MAIL BAG 3, TOWNSVILLE MAIL CENTRE
TOWNSVILLE
Queensland
4810
Australia
Owner
Australian Institute of Marine Science (AIMS) - ()
PRIVATE MAIL BAG 3, TOWNSVILLE MAIL CENTRE
TOWNSVILLE
Queensland
4810
Australia
- Website
- AIMS Web Site
- Website
- AIMS Web Site
- Credit
- Robson, B
- Credit
- COTS Control Innovation Program, Great Barrier Reef Foundation, Australia
- Credit
- Australian Institute of Marine Science (AIMS), Australia
- Credit
- Kroon, F
- Credit
- Crosswell, J
- Credit
- CSIRO Environment, Australia
- Status
- Completed
Principal investigator
Australian Institute of Marine Science (AIMS) - Kroon F ()
PRIVATE MAIL BAG 3, TOWNSVILLE MAIL CENTRE
TOWNSVILLE
Queensland
4810
Australia
Point of contact
Australian Institute of Marine Science (AIMS) - AIMS Data Centre ()
PRIVATE MAIL BAG 3, TOWNSVILLE MAIL CENTRE
TOWNSVILLE
Queensland
4810
Australia
- Temporal resolution
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- Topic category
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- Oceans
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- Description
- CoTS initiation zone
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- Description
- Collective resources start and end dates
Temporal extent
- Time position
- 2010-12-01
- Time position
- 2019-02-28
- Maintenance and update frequency
- Not planned
- AODN Discovery Parameter Vocabulary
Resource constraints
- Linkage
-
http://i.creativecommons.org/l/by/3.0/au/88x31.png
License Graphic
- Title
- Creative Commons Attribution 3.0 Australia License
- Website
-
http://creativecommons.org/licenses/by/3.0/au/
License Text
- Other constraints
- Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.
- Other constraints
- Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2023). Analysis of eReefs water quality scenarios to assess implications of land management for the CoTS initiation zone. https://apps.aims.gov.au/metadata/view/fe52851a-7f02-43ff-9cb6-93c5c7da0c49, accessed[date-of-access]".
- Language
- English
- Character encoding
- UTF8
Content Information
- Content type
- Physical measurement
Identifier
- Description
- The mass of all types of chlorophyll per unit volume of the water column held in particles of any size
Identifier
- Description
- The quantity of dissolved ions (predominantly salt in seawater) expressed on a scale (PSS-78) based on the conductivity ratio of a seawater sample to a standard KCl solution.
Identifier
Distribution Information
Distributor
Distributor
Australian Institute of Marine Science (AIMS) - AIMS Data Centre ()
PRIVATE MAIL BAG 3, TOWNSVILLE MAIL CENTRE
TOWNSVILLE
Queensland
4810
Australia
- OnLine resource
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eReefs model output
eReefs model output
- OnLine resource
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Kroon, F. J., Crosswell, J. R., & Robson, B. J. (2023). The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone. Marine Pollution Bulletin, 195, 115255. https://doi.org/10.1016/j.marpolbul.2023.115255
Kroon, F. J., Crosswell, J. R., & Robson, B. J. (2023). The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone. Marine Pollution Bulletin, 195, 115255. https://doi.org/10.1016/j.marpolbul.2023.115255
Resource lineage
- Statement
- R scripts were run in R version 4.2.1. cots1.R depends on the ereefs R package available from https://github.com/open-AIMS/ereefs and eReefs model outputs available from https://github.com/open-AIMS/ereefs -- use the version available as at 23/4/2022 as the ereefs R package has since had a major update and is not backward-compatible.
- Hierarchy level
- Dataset
- Maintenance and update frequency
- As needed
Metadata
- Metadata identifier
- fe52851a-7f02-43ff-9cb6-93c5c7da0c49
- Language
- English
- Character encoding
- UTF8
Point of contact
Australian Institute of Marine Science (AIMS) - AIMS Data Centre
PRIVATE MAIL BAG 3
TOWNSVILLE MAIL CENTRE
Queensland
4810
Australia
>
- Hours of service
- 0800 to 1640 UTC+10: Monday to Friday
- Parent metadata
Type of resource
- Resource scope
- Dataset
- Metadata linkage
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Point of truth URL of this metadata record
Point of truth URL of this metadata record
- Date info (Creation)
- 2023-09-26T00:00:00
- Date info (Revision)
- 2023-09-26T00:00:00
Metadata standard
- Title
- ISO 19115-3:2018
Overviews
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Provided by
Associated resources
Not available