AIMS Geonetwork
Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum
Transcriptomic analysis of sponges that have been exposed to different environmental conditions can improve our understanding of molecular stress response pathways and enhance our ability to effectively manage these ecologically important filter feeders.
Two common and widely distributed Indo-Pacific sponge species—Carteriospongia foliascens and Cliona orientalis were collected in May 2015 from Fantome Island and Pelorus Island in the Great Barrier Reef. Since C. orientalis is a bio-eroding sponge, ten C. orientalis drill cores (* 5cmin
diameter) were collected from a single individual growing on a dead colony of Porites sp. An individual of C.foliascens was cut into ten pieces (see Pineda et al. 2016). Sponges were healed and acclimated under natural light and flowthrough seawater for 4 weeks before experiments were performed.
Sponges were subjected to five different treatments at the Australian Institute of Marine Science (AIMS) National Sea Simulator: (i) decreased salinity, (ii) elevated temperature, (iii) elevated suspended sediment concentrations(SSCs) and sediment deposition, (iv) light attenuation, and(v) no stress control. Further details on these experiments can be found in Pineda et al. (2016).
Transcriptome sequences were assembled for C. foliascens and C. ori-entalis and from the C. orientalis holobiont, i.e., host and symbiont, a partial reference transcriptome for Gerakladium endoclionum was constructed. Further details are found in the linked paper below Strehlow et al. (2021).
Simple
Identification info
- Date (Revision)
- 2024-10-17T00:00:00
Publisher
Owner
- Website
- AIMS Web Site
- Website
- AIMS Web Site
- Credit
- Webster, N S. (AIMS & WAMSI) and University of Queensland (UQ)
- Credit
- Pineda, MC. (AIMS & WAMSI)
- Credit
- Clode, PL. (UWA)
- Credit
- Laffy, P. (AIMS & WAMSI)
- Credit
- Renton, M. (UWA)
- Credit
- Strehlow, BW. University of Southern Denmark, University of Western Australia (UWA), Australian Institute of Marine Science (AIMS), Western Australian Marine Science Institution (WAMSI)
- Credit
- Kenkel, C D. (AIMS) and University of Southern California, USA
- Credit
- Duckworth, A. (AIMS & WAMSI)
- Status
- Completed
Principal investigator
Point of contact
- Temporal resolution
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P1Y0M0DT0H0M0S
- Topic category
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- Oceans
Extent
- Description
- Fantome Island
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Extent
- Description
- Pelorus Island
))
Extent
- Description
- Collective resources start and end dates
Temporal extent
- Time position
- 2015-05-01
- Time position
- 2015-05-31
- Maintenance and update frequency
- Not planned
- AODN Discovery Parameter Vocabulary
Resource constraints
- Linkage
-
http://i.creativecommons.org/l/by/3.0/au/88x31.png
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- Title
- Creative Commons Attribution 3.0 Australia License
- Website
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http://creativecommons.org/licenses/by/3.0/au/
License Text
- Other constraints
- Use Limitation: All AIMS data, products and services are provided "as is" and AIMS does not warrant their fitness for a particular purpose or non-infringement. While AIMS has made every reasonable effort to ensure high quality of the data, products and services, to the extent permitted by law the data, products and services are provided without any warranties of any kind, either expressed or implied, including without limitation any implied warranties of title, merchantability, and fitness for a particular purpose or non-infringement. AIMS make no representation or warranty that the data, products and services are accurate, complete, reliable or current. To the extent permitted by law, AIMS exclude all liability to any person arising directly or indirectly from the use of the data, products and services.
- Other constraints
- Attribution: Format for citation of metadata sourced from Australian Institute of Marine Science (AIMS) in a list of reference is as follows: "Australian Institute of Marine Science (AIMS). (2021). Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. https://apps.aims.gov.au/metadata/view/ab46a139-2901-4d47-910f-031a5b69c0eb, accessed[date-of-access]".
- Language
- English
- Character encoding
- UTF8
Content Information
- Content type
- Physical measurement
Identifier
Distribution Information
Distributor
Distributor
- OnLine resource
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Strehlow, B.W., Pineda, MC., Kenkel, C.D. et al. Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. Coral Reefs 40, 9–13 (2021). https://doi.org/10.1007/s00338-020-02028-z
Strehlow, B.W., Pineda, MC., Kenkel, C.D. et al. Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. Coral Reefs 40, 9–13 (2021). https://doi.org/10.1007/s00338-020-02028-z
- OnLine resource
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Raw data is deposited in NCBI’s SRA under accession numbers PRJNA639714 and PRJNA639798 for the C. orientalis holobiont and C. foliascens
Raw data is deposited in NCBI’s SRA under accession numbers PRJNA639714 and PRJNA639798 for the C. orientalis holobiont and C. foliascens
- OnLine resource
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These scripts were used for trimming, assembly and annotation of transcriptomes for the marine sponges (Porifera) Carteriospongia foliascens and Cliona orientalis as well as Gerakladium endoclionum (algal endosymbiont of C. orientalis).
These scripts were used for trimming, assembly and annotation of transcriptomes for the marine sponges (Porifera) Carteriospongia foliascens and Cliona orientalis as well as Gerakladium endoclionum (algal endosymbiont of C. orientalis).
- OnLine resource
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transcriptome_data_final.zip [size 2.53 GB]
transcriptome_data_final.zip [size 2.53 GB]
Resource lineage
- Statement
- References: SeaSim Experiments: Pineda M-C, Strehlow B, Duckworth A, Doyle J, Jones R, Webster NS (2016) Effects of light attenuation on the sponge holobiont-implications for dredging management. Sci Rep 6:1–13 Established protocols: Kenkel CD, Bay LK (2017) Novel transcriptome resources for threescleractinian coral species from the Indo-Pacific Gigascience 6:1-4 Full details and quality controls have been described in the paper: Strehlow, B.W., Pineda, MC., Kenkel, C.D. et al. Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. Coral Reefs 40, 9–13 (2021). https://doi.org/10.1007/s00338-020-02028-z
- Hierarchy level
- Dataset
- Maintenance and update frequency
- As needed
Metadata
- Metadata identifier
- ab46a139-2901-4d47-910f-031a5b69c0eb
- Language
- English
- Character encoding
- UTF8
Point of contact
- Hours of service
- 0800 to 1640 UTC+10: Monday to Friday
Type of resource
- Resource scope
- Dataset
- Metadata linkage
-
Point of truth URL of this metadata record
Point of truth URL of this metadata record
- Date info (Creation)
- 2021-10-26T00:00:00
- Date info (Revision)
- 2021-10-29T00:00:00
Metadata standard
- Title
- ISO 19115-3:2018
Overviews
Spatial extent
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